
Image: Illustration by Jude Buffum
In Brief
- Traditional methods of vaccine design depend a lot on trial and error. Researchers develop a compound they think should provoke an immune response and then test it on thousands of people.
- An emerging field of research called systems biology could make the development and testing of vaccines faster and more efficient.
- Research teams measure changes in genetic activity, protein levels and cellular behavior of the immune system in response to a potential vaccine. Powerful computers analyze the resulting data to develop molecular profiles of those responses.
- By comparing these profiles with the ideal profile that should be generated by a wholly protective immune response, investigators can quickly home in on and improve the most promising vaccine formulas.
More In This Article
Aids researchers and advocates were devastated in 2007, when a much anticipated vaccine against HIV unexpectedly failed to protect anyone in a clinical trial of 3,000 people. Even worse, the experimental inoculation, developed with money from the Merck pharmaceutical company and the National Institute of Allergy and Infectious Diseases, actually increased the chances that some people would later acquire HIV. Millions of dollars and more than a decade of research had gone into creating the vaccine. Meanwhile, in that same 10-year period, 18 million people died of AIDS, and millions more were infected.
The Merck vaccine failed in large part because investigators do not yet know how to create the perfect vaccine. Yes, a number of vaccines have been spectacularly successful. Think of polio and smallpox. In truth, though, luck played a big role in those successes. Based on limited knowledge of the immune system and of the biology of a pathogen, investigators made educated guesses at vaccine formulations that might work and then, perhaps after some tinkering, had the good fortune to be proved right when the vaccine protected people. But all too often lack of insight into the needed immune response leads to disappointment, with a vaccine candidate recognized as ineffective only after a large human trial has been performed.
This article was originally published with the title Fast Track to Vaccines.
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4 Comments
Add CommentAt last medical researchers seem to be realising that systems are not made up of discrete components that can be studied independent of the context within which they operate.
Reply | Report Abuse | Link to thisRead enough biology reports and you occasionally come across one in which a biologist comments on the incredible complexity of the system being studied. But the subject of the vast majority of biological studies is a tiny fraction of a system, with little perspective on how it fits in that system.
That focused approach and the assumption that interactions are competitive in nature, fail to give biologists an understanding of the system they are studying. An example I often use are the multiple connections between muscles and axons. Much is known about the progressive elimination of connections and strengthening of surviving connections. Biologists call it competition at the neuromuscular junction, but have no explanation of why the mechanism evolved and what it evolved to do. In fact, such questions are prohibited by the rule that there can be no purpose in evolution, so presumably this complex, resource intensive mechanism just happened by blind chance.
Viewed from the perspective of the varying external conditions in which muscle connections are established, this can be seen as a mechanism that evolved to enable each individual's body to co-ordinate muscles that have to work together through the same axon and connect different muscle groups through different axons to avoid excessive demand on an axon at critical times.
The oversupply and progressive elimination of connections can be recognised as an adaptive mechanism that wires up muscle connections to suit the specific lifestyle of that individual by the simple mechanism of using muscles the way the lifestyle demands.
That mechanism must have evolved when individuals whose bodies lacked that mechanism were eliminated when their bodies were unable to adapt by changing behaviours when there was a major change in external conditions.
If that is so obvious, why have biologists who have been studying competition at the neuromuscular junction for decades failed to see it? The reason is that their research approach and assumptions do not allow them to see what is sitting in front of them.
The ultimate solution to HIV will be to evolve around it, as we've done several times before for different strains. The coming dark age will speed that considerably, and in return, HIV will help us reduce population to sustainable levels. We've gotta keep thinking of the 'positive' side.
Reply | Report Abuse | Link to thisMy Magic Magee Story
Reply | Report Abuse | Link to thisMad Scientist meets Radio Talk Show Host
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This approach may fast track vaccines that use similar mechanisms as proven ones, but is no use for testing vaccines using different mechanisms. It may reject a good vaccine simply because it produces a different signature. Besides, immune response in a test tube is often very different from that in the human body, and therefore it is risky to throw away 'inferior' candidates based on simple signature comparison.
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