ADVERTISEMENT

Phylo

Phylo

Though it may appear to be just a game, Phylo is actually a framework for harnessing computing power to solve the problem of multiple sequence alignments. Citizen scientists play the game by arranging nucleotides. The goal of the game is to maximize the matches and minimize the mismatches between the DNA sequences on the digital game board.

A sequence alignment is a way of arranging the sequences of DNA, RNA or protein to identify regions of similarity. These similarities may be consequences of functional, structural or evolutionary relationships between the sequences. From such an alignment, biologists may infer shared evolutionary origins, identify functionally important sites, and illustrate mutation events. More importantly, biologists can trace the source of certain genetic diseases.

Traditionally, multiple sequence alignment algorithms use computationally complex heuristics—trial-and-error efforts—to align the sequences. This approach requires a lot of computing power given the sheer size of the genome, which consists of roughly three billion base pairs. Humans are good at recognizing patterns and solving visual problems efficiently, so adding citizen scientists to the equation is expected to optimize alignments in ways that the computer algorithm can't.

Project Details

  • PRINCIPAL SCIENTIST: Jerome Waldispuhl and Mathieu Blanchette
  • SCIENTIST AFFILIATION: McGill Center for BioInformatics
  • DATES: Ongoing
  • PROJECT TYPE: Data Processing
  • COST: Free
  • GRADE LEVEL: All Ages
  • TIME COMMITMENT: Variable
  • HOW TO JOIN:

    Visit the Phylo Web site and watch the tutorial.

See more projects in FreeData ProcessingAll Ages.

What Is Citizen Science?

Research often involves teams of scientists collaborating across continents. Now, using the power of the Internet, non-specialists are participating, too. Citizen Science falls into many categories. A pioneering project was SETI@Home, which has harnessed the idle computing time of millions of participants in the search for extraterrestrial life. Citizen scientists also act as volunteer classifiers of heavenly objects, such as in Galaxy Zoo. They make observations of the natural world, as in The Great Sunflower Project. And they even solve puzzles to design proteins, such as FoldIt. We'll add projects regularly—and please tell us about others you like as well.

Share this Article:

Comments

You must sign in or register as a ScientificAmerican.com member to submit a comment.
Scientific American Back To School

Back to School Sale!

12 Digital Issues + 4 Years of Archive Access just $19.99

Order Now >

X

Email this Article



This function is currently unavailable

X