Scientists Mount Miniature Microscope on a Rat's Head to View Living Brain

Join Our Community of Science Lovers!


On supporting science journalism

If you're enjoying this article, consider supporting our award-winning journalism by subscribing. By purchasing a subscription you are helping to ensure the future of impactful stories about the discoveries and ideas shaping our world today.


In an effort to really get inside the head of a rat, researchers at Bell Laboratories decided to stick a microscope inside an animal¿s skull. The results of their work, published in yesterday¿s Neuron, fell just short of their goal: observing brain cells in mobile rats.

Fritjof Helmchen and colleagues captured images of fluorescent dye traveling through blood vessels and brain cells in sleeping rodents, but the scientists could view only blood vessels in waking animals. To do so, they removed a small portion of the cranium and shined a laser light inside. In their microscope setup, a fiber-optic wire spat out photons as a piezoelectric crystal made it vibrate in two dimensions. A photomultiplier tube captured the light emitted from the dye, then a computer constructed an image by comparing the time the light entered the tube to where the fiber had been along its path at that time.

The images remained clear as the rats chewed and walked around but were obscured when the animals jerked their heads and, inevitably, banged the scope against their cages. An occasional brain twitch also tended to shift the image. Unfortunately, difficulties in getting the dye into brain cells and then finding them with the microscope prevented their visualization. The authors hope that by inserting DNA capable of producing a fluorescent protein into brain cells and by making the scope smaller and more maneuverable, they will overcome these difficulties. "[W]e have not quite succeeded in demonstrating what clearly is the ultimate goal of our efforts: functional imaging of neurons in freely moving animals," they write. "We still believe that [this] technology ... will eventually allow us to achieve this goal.

It’s Time to Stand Up for Science

If you enjoyed this article, I’d like to ask for your support. Scientific American has served as an advocate for science and industry for 180 years, and right now may be the most critical moment in that two-century history.

I’ve been a Scientific American subscriber since I was 12 years old, and it helped shape the way I look at the world. SciAm always educates and delights me, and inspires a sense of awe for our vast, beautiful universe. I hope it does that for you, too.

If you subscribe to Scientific American, you help ensure that our coverage is centered on meaningful research and discovery; that we have the resources to report on the decisions that threaten labs across the U.S.; and that we support both budding and working scientists at a time when the value of science itself too often goes unrecognized.

In return, you get essential news, captivating podcasts, brilliant infographics, can't-miss newsletters, must-watch videos, challenging games, and the science world's best writing and reporting. You can even gift someone a subscription.

There has never been a more important time for us to stand up and show why science matters. I hope you’ll support us in that mission.

Thank you,

David M. Ewalt, Editor in Chief, Scientific American

Subscribe